Titlebook: User-Level Workflow Design; A Bioinformatics Per Anna-Lena Lamprecht Book 2013 Springer-Verlag Berlin Heidelberg 2013 EDAM ontology.bioinfo

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Microarray Data Analysis Pipelineses. Consequently, the constraint-driven workflow composition functionality of the PROPHETS plugin, which is based on a linear-time logic synthesis algorithm, can conveniently be used for complete, start-to-end generation of the workflows.

Habituate

Introduction follows a novel, constraint-driven approach to domain-specific design and management of variant-rich workflows and systematically evaluates its features based on a selection of bioinformatics application scenarios. This introductory chapter motivates the work (Section 1.1) and outlines the results

Water-Brash

The Bio-jETI Frameworkf this work. It is based on the jABC framework [306, 229] for model-driven, service-oriented workflow development. Providing comprehensive means for the design, execution and deployment of workflows, already the standard jABC framework covers the common aspects of workflow management.

Manifest

Phylogenetic Analysis Workflowsis also a plethora of easy-to-use software tools available for the individual analysis steps, phylogenetic analyses have become a frequently used, quasistandard application for illustrating bioinformatics workflow technology (cf., e.g., [256, 134, 155, 265, 165]). Furthermore, the annotation with se

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FiatFlux-P[353]. In addition to the integration of its principal functionality as elementary services, new services were implemented that emulate the user interaction with FiatFlux in order to enable automation. Like GeneFisher-P, the resulting . facilitates building variants and defining batch processing wor

nullify

Microarray Data Analysis Pipelinesed by Bioconductor [105]. This kind of bioinformatics workflows is frequently referred to as data analysis “pipelines”, as they typically have a simple, in fact mostly linear, workflow structure, while the (often considerable) complexity of the individual analysis steps is encapsulated by the servic

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