Titlebook: Research in Computational Molecular Biology; 9th Annual Internati Satoru Miyano,Jill Mesirov,Michael Waterman Conference proceedings 2005 S

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RNA-RNA Interaction Prediction and Antisense RNA Target Searchnd develop efficient algorithms to solve it. Our algorithms minimize the joint free-energy between the two RNA molecules under a number of energy models with growing complexity. Because the computational resources needed by our most accurate approach is prohibitive for long RNA molecules, we also de

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A Polynomial Time Solvable Formulation of Multiple Sequence Alignmentaccuracy with the preserving alignment formulation. We show that a reasonable objective function to use is to find the shortest preserving alignment, and, by a reduction to a graph-theoretic problem, that the problem of finding the shortest preserving multiple alignment can be solved in polynomial t

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