Titlebook: Microeconomic Theory and Computation; Applying the Maxima Michael R. Hammock,J. Wilson Mixon Book 2013 Springer Science+Business Media New

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Michael R. Hammock,J. Wilson Mixonbly) to a reference. It is used as an intermediate step in several alignment tools that employ a seed-chain-extend strategy. Despite this popularity, efficient subquadratic-time algorithms for the general case where chains support anchor overlaps and gap costs are not currently known. We present alg

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Michael R. Hammock,J. Wilson Mixonny queried .-mer can be rapidly identified. An efficient and scalable solution to this problem is fundamental for many tasks in bioinformatics..In this work, we introduce the . (SPT), a general representation of . that specifies how a set of . repeatedly occur to spell out the constituent reference

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Michael R. Hammock,J. Wilson Mixonapproach to combine short exact matches. For co-linear chaining between two sequences, efficient subquadratic-time chaining algorithms are well-known for linear, concave and convex gap cost functions [Eppstein . JACM’92]. However, developing extensions of chaining algorithms for directed acyclic gra

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Michael R. Hammock,J. Wilson Mixonitional methods are then used to root these unrooted trees. Recently, Quintet Rooting (QR) (Tabatabaee et al., ISMB and Bioinformatics 2022), a polynomial-time method for rooting an unrooted species tree given unrooted gene trees under the multispecies coalescent, was introduced. QR, which is based

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Michael R. Hammock,J. Wilson Mixontating the reconstruction of high-quality metagenome-assembled genomes (MAGs) from complex microbial communities. However, current Hi-C-based contig binning methods solely depend on Hi-C interactions between contigs to group them, ignoring invaluable biological information, including the presence of

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