Titlebook: Haplotyping; Methods and Protocol Brock A. Peters,Radoje Drmanac Book 2023 The Editor(s) (if applicable) and The Author(s), under exclusive

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Determining Complete Chromosomal Haplotypes by mLinker,that the complete chromosomal haplotype of diploid human genomes can be determined using molecular linkage from Hi-C sequencing and linked-reads sequencing [.]. In this chapter, we present a step-by-step guide to perform this analysis using mLinker, a software package for haplotype inference.

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Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads,tial information for the causes of hereditary diseases and the sources of individual variability. Recent technical breakthroughs in linked-read (referred to as co-barcoding in other chapters of the book) and long-read sequencing and downstream analysis have brought the goal of accurate and complete

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Phased Genome Assemblies,e two copies of each chromosome. Unfortunately, the allele linkage information needed to perform phased genome assemblies has been difficult to generate. Hence, most current genome assemblies are a haploid mixture of the two underlying chromosome copies present in the sequenced individual. Sequencin