Titlebook: Comparative Genomics; 15th International W Joao Meidanis,Luay Nakhleh Conference proceedings 2017 Springer International Publishing AG 2017

diathermy

John K. Westwick,Jane E. Lamerdin NP-hard optimization criterion. A recent approach to computing large trees has been to constrain the search space by defining a set of “allowed bipartitions”, and then use dynamic programming to find provably optimal solutions in polynomial time. Several phylogenomic estimation methods, such as AST

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Analysis of GPCR/Ion Channel Interactionsently unknown. In this formulation, each genome is represented as a permutation on . elements that is the product of disjoint cycles of length 1 (.) and length 2 (.). The permutations are converted into their matrix representation, and the . . is used to define the median..In their paper, the author

OTTER

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Signal Transduction and Bacterial Virulencereduce uncertainty takes the topology of the species tree into account. Under a maximum parsimony model, the best resolution of the weak branches is the binary tree that minimizes the cost of duplications, transfers, and losses. However, this problem is NP-hard, and the exact algorithm is limited to

excrete

Joao Meidanis,Luay NakhlehIncludes supplementary material:

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The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploiding whole genome doubling (WGD), motivated by the evolution of plants over many tens of millions of years, with their repeated cycles of genome doubling and fractionation. We focus on the frequency distribution of similarities between the two genes, over all the duplicate pairs in the genome. Our mod

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Synapse

ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches,given gene trees while accounting for incomplete lineage sorting. It finds the tree that shares the maximum number of quartets with input trees, drawing bipartitions from a predefined set of bipartitions .. In this paper, we introduce ASTRAL-III, which substantially improves on ASTRAL-II in terms of