Titlebook: Bioinformatics; Volume I: Data, Sequ Jonathan M. Keith Book 2017Latest edition Springer Science+Business Media, LLC, part of Springer Natur

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Genomic Database Searching locus and sequence information using gene names or codes, identifiers for DNA and RNA molecules and proteins; also from karyotype bands, chromosomal coordinates, sequences, motifs, and matrix-based patterns. Approaches are also described for batch retrieval of genomic information, performing more c

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Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Eventsmic groups and single cell-based sequencing of unculturable “microbial dark matter.” Environmental shotgun sequencing enables the study of LGT among organisms that share the same habitat..This abundance of genomic data offers new opportunities for scientific discovery, but poses two key problems. As

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Book 2017Latest editionnding field of bioinformatics. .Bioinformatics, Volume I: Data, Sequence Analysis, and Evolution, Second Edition. is comprised of three sections: Data and Databases, Sequence Analysis, and Phylogenetics and Evolution. The first section details bioinformatics methodologies in the generation of sequen

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Managing Sequence Datain sequences. This chapter discusses the structure and history of the nucleotide sequence database resources built at NCBI, provides information on how to submit sequences to the databases, and explains how to access the sequence data.

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Sequence Segmentation with , a command line interface for . is described. Here we present a graphical user interface for this package, called .. This interface also includes tools for pre- and post-processing of data and results to facilitate investigation of the number and characteristics of segment classes.

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Christine Carius,Sybille Reinke de Buitragoach contig is constructed by computing alignments of multiple reads without gaps. This strategy has been implemented as a short read assembly program called PCAP.Solexa. We also describe how to use PCAP. Solexa in assembly of short reads.