Titlebook: Applications of Membrane Computing in Systems and Synthetic Biology; Pierluigi Frisco,Marian Gheorghe,Mario J. Pérez-Ji Book 2014 Springer

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https://doi.org/10.1007/978-3-319-03191-0Complex Systems; Membrane Computing; Membrane Systems; Natural Computing; Systems and Synthetic Biology;

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978-3-319-38097-1Springer International Publishing Switzerland 2014

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Brian Wong M.D.,J. Stone Doggett M.D.tems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in s

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Raghav Wusirika,David H. Ellison. To overcome the intractable model size of typical biological systems, . model checking may be used to efficiently estimate the probability of properties of interest with arbitrary levels of confidence. In this chapter we analyse a biological system linked to breast cancer, using statistical model

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Clemens Bergwitz,Harald Jüppnerstems, called .-DPP, is used for the modeling, simulation and analysis of bacterial chemotaxis. Two different models of this signal transduction pathway are presented. The first is a single volume model used to investigate the properties of bacterial chemotaxis and to analyze the effects of differen

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Clemens Bergwitz,Harald Jüppnerlling population dynamics on real ecosystems. The semantics of these systems is captured by the Direct distribution based on Consistent Blocks Algorithm (DCBA), which has been engineered into software simulation tools. In particular, . (Membrane Computing Simulator) is a GUI developed in the framewo

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Diagnosis and Treatment of Osteoporosisoral modelling, and predictive simulation. Due to the discrete manner of molecular assembly in cell signalling and gene regulation, we define a framework of membrane systems equipped with discretised forms of reaction kinetics in concert with variable intramolecular structures. Our first study is de

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https://doi.org/10.1007/978-1-4612-3240-7molecular signaling cascades. The algorithm is presented with pseudocode along with an explanation of its implementation. We discuss several important extensions including: (i) a heap with special maintenance functions for sorting reaction waiting times, (ii) a nondeterminstic component for handling