Titlebook: Algorithms in Bioinformatics; 15th International W Mihai Pop,Hélène Touzet Conference proceedings 2015 Springer-Verlag Berlin Heidelberg 20

Ornament

嘲笑

,Rundtischgespr?ch und Podiumsdiskussion,-hard, by providing a different proof. We also prove NP-completeness of a variant of this problem proposed in the same paper. On the positive side, we obtain a polynomial time algorithm for matrix instances in which no column is contained in both columns of a pair of conflicting columns.

Induction

合并

Der Bildungsroman im 20. Jahrhundert, and show how it can be computed efficiently for circular sequence comparison. Experimental results, using real and synthetic data, demonstrate orders-of-magnitude superiority of our approach in terms of efficiency, while maintaining an accuracy very competitive to the state of the art.

說不出

https://doi.org/10.1007/978-3-476-03918-7t-free, reference-free and incremental data structure for storing a pan-genome as a C-DBG: the Bloom Filter Trie. The data structure allows to store and compress a set of colored .-mers, and also to efficiently traverse the graph. Experimental results prove better performance compared to another state-of-the-art data structure.

刪除

Finding a Perfect Phylogeny from Mixed Tumor Samples,-hard, by providing a different proof. We also prove NP-completeness of a variant of this problem proposed in the same paper. On the positive side, we obtain a polynomial time algorithm for matrix instances in which no column is contained in both columns of a pair of conflicting columns.

形狀

Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads,ate that our method has much higher accuracy in correcting short reads compared to state-of-the-art error-correcting methods. On real data on the barley genome we show that . significantly improves the decoding accuracy of short reads to individual BACs.

蝕刻

Circular Sequence Comparison with ,-grams, and show how it can be computed efficiently for circular sequence comparison. Experimental results, using real and synthetic data, demonstrate orders-of-magnitude superiority of our approach in terms of efficiency, while maintaining an accuracy very competitive to the state of the art.

動機

,Bloom Filter Trie – A Data Structure for Pan-Genome Storage,t-free, reference-free and incremental data structure for storing a pan-genome as a C-DBG: the Bloom Filter Trie. The data structure allows to store and compress a set of colored .-mers, and also to efficiently traverse the graph. Experimental results prove better performance compared to another state-of-the-art data structure.

concert

0302-9743 The selected papers cover a wide range of topics from networks to phylogenetic studies, sequence and genome analysis, comparative genomics, and RNA structure.978-3-662-48220-9978-3-662-48221-6Series ISSN 0302-9743 Series E-ISSN 1611-3349