Titlebook: Algorithms in Bioinformatics; Third International Gary Benson,Roderic D. M. Page Conference proceedings 2003 Springer-Verlag Berlin Heidel

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A Stochastic Approach to Count RNA Molecules Using DNA Sequencing Methodsethods can only distinguish molecules with different sequences or of different lengths. Recently, it was shown that it is possible to combine RNA molecules with short DNA molecules (tags) such that, with high probability, any two RNA molecules are combined with tags having different sequences. For t

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A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequencblem (MEFC). Then, we develop an algorithm to detect splicing sites based on the idea of using a combined analysis of a set of ESTs alignments to a genomic sequence instead of considering single EST alignments. In this way we require that all ESTs alignments must agree, i.e. are . to a plausible exo

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