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Titlebook: Algorithms in Bioinformatics; 4th International Wo Inge Jonassen,Junhyong Kim Conference proceedings 2004 Springer-Verlag Berlin Heidelberg

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https://doi.org/10.1007/978-3-322-92381-3ls. In particular, it answers an open question raised by Vialette that, rephrased in terms of contact maps, asked whether . for .-structured patterns is NP-hard or solvable in polynomial time. Our result stands in sharp contrast to the NP-hardness of closely related problems. We provide experimental
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https://doi.org/10.1007/978-3-658-35481-7 overall .(.) time. Further, monotonicity conditions are introduced and studied for probabilities and expected occurrences of a substring under unit increases in its length, allowed number of errors, or both. Over intervals of constant frequency count, these monotonicities translate to some of the s
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https://doi.org/10.1007/978-3-322-88586-9he five species, ., ., ., ., and .. It is interesting that many of the substrings selected by our algorithm from the coding sequences of . are substrings in the intronic sequences flanking the alternatively spliced exons of the coding sequence. This result implies that regulatory elements of alterna
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Joint Analysis of DNA Copy Numbers and Gene Expression Levelsresults. In joint DNA copy number and expression data we define significantly altered submatrices as submatrices where a statistically significant correlation of DNA copy number to expression is observed. We develop heuristic approaches to identify these structures in data matrices. We apply all met
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