標(biāo)題: Titlebook: Algorithms for Computational Biology; 6th International Co Ian Holmes,Carlos Martín-Vide,Miguel A. Vega-Rodrí Conference proceedings 2019 S [打印本頁(yè)] 作者: Cataplexy 時(shí)間: 2025-3-21 16:11
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作者: 有其法作用 時(shí)間: 2025-3-21 21:42 作者: Offbeat 時(shí)間: 2025-3-22 00:57 作者: 吹氣 時(shí)間: 2025-3-22 08:37 作者: 溫室 時(shí)間: 2025-3-22 11:27
Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknotshm was introduced to partition dual graphs into maximal topological components called blocks and determine whether each block contains a pseudoknot or not. This characterization allowed us to efficiently isolate smaller RNA fragments and classify them as pseudoknotted or pseudoknot-free regions, whi作者: 水獺 時(shí)間: 2025-3-22 16:53 作者: 媒介 時(shí)間: 2025-3-22 17:08
A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems. Since most dramatic changes in genomic architectures are caused by genome rearrangements, this problem is often posed as minimization of the number of genome rearrangements between extant and ancestral genomes. The basic case of three given genomes is known as the .. Whole genome duplications (WGD作者: tattle 時(shí)間: 2025-3-22 23:33
Lightweight Metagenomic Classification via eBWTenomics, whose aim is to identify the microorganisms that are present in a sample collected directly from the environment. In this paper, we describe a new lightweight alignment-free and assembly-free framework for metagenomic classification that compares each unknown sequence in the sample to a col作者: Adulterate 時(shí)間: 2025-3-23 02:48 作者: Arthr- 時(shí)間: 2025-3-23 08:48
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distances one genome into another whose length (possibly weighted) equals the distance between them. These sequences are called optimal sorting scenarios. However, there is usually a large number of such scenarios, and a na?ve algorithm is very likely to be biased towards a specific type of scenario, impair作者: cacophony 時(shí)間: 2025-3-23 12:03 作者: acquisition 時(shí)間: 2025-3-23 14:36
Using , Within Divide-and-Conquer Phylogeny Estimationn to be absolute fast converging under standard sequence evolution models. A variant of . which allows a set of disjoint constraint trees to be provided and then uses INC to merge the constraint trees was also presented (i.e., Constrained .). We report on a study evaluating . on a range of simulated作者: 窗簾等 時(shí)間: 2025-3-23 21:21 作者: 喧鬧 時(shí)間: 2025-3-24 01:47 作者: Control-Group 時(shí)間: 2025-3-24 02:22 作者: 妨礙 時(shí)間: 2025-3-24 06:42
Conference proceedings 2019SA, in May 2019...The 15 full papers presented together with 1 invited paper were carefully reviewed and selected from 30 submissions. They are organized in the following topical sections: Biological networks and graph algorithms; genome rearrangement, assembly and classification; sequence analysis, phylogenetics and other biological processes..作者: 相信 時(shí)間: 2025-3-24 10:50 作者: HALO 時(shí)間: 2025-3-24 16:01
Lecture Notes in Computer Sciencehttp://image.papertrans.cn/a/image/153211.jpg作者: STERN 時(shí)間: 2025-3-24 22:09 作者: 蔓藤圖飾 時(shí)間: 2025-3-25 02:11
978-3-030-18173-4Springer Nature Switzerland AG 2019作者: 種族被根除 時(shí)間: 2025-3-25 05:56
https://doi.org/10.1007/978-3-658-07532-3fe might be achievable. Yet, the most accurate methods for estimating phylogenies are heuristics for NP-hard optimization problems, many of which are too computationally intensive to use on large datasets. Divide-and-conquer approaches have been proposed to address scalability to large datasets that作者: 討好美人 時(shí)間: 2025-3-25 09:29 作者: Density 時(shí)間: 2025-3-25 12:02 作者: MINT 時(shí)間: 2025-3-25 19:22 作者: 山頂可休息 時(shí)間: 2025-3-25 22:50 作者: oracle 時(shí)間: 2025-3-26 02:29 作者: vitreous-humor 時(shí)間: 2025-3-26 06:29 作者: RENAL 時(shí)間: 2025-3-26 10:16
Technische Herstellung von Camphen,enomics, whose aim is to identify the microorganisms that are present in a sample collected directly from the environment. In this paper, we describe a new lightweight alignment-free and assembly-free framework for metagenomic classification that compares each unknown sequence in the sample to a col作者: MAG 時(shí)間: 2025-3-26 14:37 作者: 安心地散步 時(shí)間: 2025-3-26 20:11 作者: enhance 時(shí)間: 2025-3-26 21:11
https://doi.org/10.1007/978-3-531-90394-1o far, this model only supported comparisons between genomes with the same gene content. We seek to generalize it, allowing for genomes with different gene content. In this paper, we approach such generalization from two different angles, both using the same representation of genomes, and leading to作者: Exclude 時(shí)間: 2025-3-27 03:55 作者: 痛恨 時(shí)間: 2025-3-27 09:19
https://doi.org/10.1007/978-3-531-90394-1y cancer. Hence, the sequence determinants of methylation and the relationship between methylation and expression are of great interest from a molecular biology perspective. Several models have been suggested to support the prediction of methylation status. These models, however, have two main limit作者: 遠(yuǎn)地點(diǎn) 時(shí)間: 2025-3-27 09:42
https://doi.org/10.1007/978-3-531-90394-1gether with DNA looping result in transcription initiation. In addition to binding motifs for TFs, enhancer regions typically contain specific histone modifications. This information has been used to detect enhancer regions and classify them into different subgroups. However, it is poorly understood作者: 動(dòng)物 時(shí)間: 2025-3-27 14:11
https://doi.org/10.1007/978-3-531-90394-1from RNA-seq reads. The streaming algorithm is fast and memory efficient but its accuracy can depend on the order of the reads, which can be stabilized if a tree can be constructed to capture the ambiguity structure. Motivated by this, the . is introduced, which is proved to be NP-hard. Hardness of 作者: 夸張 時(shí)間: 2025-3-27 18:34 作者: Diastole 時(shí)間: 2025-3-28 01:53 作者: 偶然 時(shí)間: 2025-3-28 05:01
Frederic Fredersdorf,Wolfgang Heckmannem is known to be NP-complete, and we describe further result concerning a special class of graphs aiming to be close to real instances. The described algorithm is the first polynomial-time approximation algorithm designed for this problem on non-complete graphs.作者: painkillers 時(shí)間: 2025-3-28 09:20 作者: visual-cortex 時(shí)間: 2025-3-28 10:37
New Polynomial-Time Algorithm Around the Scaffolding Problemem is known to be NP-complete, and we describe further result concerning a special class of graphs aiming to be close to real instances. The described algorithm is the first polynomial-time approximation algorithm designed for this problem on non-complete graphs.作者: 收集 時(shí)間: 2025-3-28 15:10
Generalizations of the Genomic Rank Distance to Indels gene content. In this paper, we approach such generalization from two different angles, both using the same representation of genomes, and leading to simple distance formulas and sorting algorithms for genomes with different gene contents, but without duplications.作者: SNEER 時(shí)間: 2025-3-28 20:15
0302-9743 are organized in the following topical sections: Biological networks and graph algorithms; genome rearrangement, assembly and classification; sequence analysis, phylogenetics and other biological processes..978-3-030-18173-4978-3-030-18174-1Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: 有機(jī)體 時(shí)間: 2025-3-29 01:27
https://doi.org/10.1007/978-3-531-90394-1approximation and approximability results are also provided. Finally, an integer linear programming (ILP) formulation and a greedy approach are applied to real data from the human transcriptome to demonstrate that large instances can be solved in practice.作者: Mediocre 時(shí)間: 2025-3-29 05:28 作者: evasive 時(shí)間: 2025-3-29 10:23
Der Technikdiskurs in der Hitler-Stalin-?rathe whole assembly graph, regardless whether the sequence of interested is encoded on the single contig or scattered across the set of edges, therefore significantly improving the recovery of sequences of interest even from fragmented metagenome assemblies.作者: TEM 時(shí)間: 2025-3-29 12:12
Chemische Technologie in Einzeldarstellungenviously proposed for the genome median problem to the genome halving and aliquoting problems. Our study lays a theoretical foundation for practical algorithms for the reconstruction of pre-duplicated ancestral genomes.作者: 宿醉 時(shí)間: 2025-3-29 17:29
,Abflu?vorrichtungen an Teichen,l the genomes that can occur in an optimal sorting scenario. In this paper, we show how to count the number of optimal sorting scenarios and the number of intermediate genomes between any two given genomes, under the rank distance.作者: Malfunction 時(shí)間: 2025-3-29 23:15 作者: exclamation 時(shí)間: 2025-3-29 23:59
P,R,: Racing Profile HMM Paths on Assembly Graphthe whole assembly graph, regardless whether the sequence of interested is encoded on the single contig or scattered across the set of edges, therefore significantly improving the recovery of sequences of interest even from fragmented metagenome assemblies.作者: 彎曲的人 時(shí)間: 2025-3-30 06:59 作者: Pruritus 時(shí)間: 2025-3-30 10:09
